AraNet - Probabilistic Functional Gene Network of Arabidopsis thaliana Tool name | AraNet - Probabilistic Functional Gene Network of Arabidopsis thaliana |
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URL | http://www.functionalnet.org/aranet |
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Important features | A resource of interactions in plant proteins (Arabidopsis thaliana). Provides both experimental & predicted interactions. Provides interactions based on the proteins' sequence conservation/similarity. Provides functional associations for the interactions. Provides the pathway and other proteins involved, along with the interactions, for a given set of proteins. Predicted interaction based on gene expression. Provides interactions along with their functional associations. Interactions can be restricted to a given experimental evidence. |
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Citations | Lee I, Ambaru B, Thakkar P, Marcotte EM, Rhee SY. Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana. Nat Biotechnol. 2010 Feb;28(2):149-56. Epub 2010 Jan 31. PubMed PMID: 20118918; PubMed Central PMCID: PMC2857375. |
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Year of publication | 2010 |
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Rank by usage frequency | 100 |
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Comments | |
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Function | Provide pathway along with PPIs, for a given set of proteins, Predicted PPIs based on gene expression, PPIs with their functional associations, PPIs and their categories based on evidence type, PPIs of plants proteins, Predicted PPIs based on the protein structure |
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Category | http://www.functionalnet.org/aranet, A resource of interactions in plant proteins (Arabidopsis thaliana). Provides both experimental & predicted interactions. Provides interactions based on the proteins' sequence conservation/similarity. Provides functional associations for the interactions. Provides the pathway and other proteins involved, along with the interactions, for a given set of proteins. Predicted interaction based on gene expression. Provides interactions along with their functional associations. Interactions can be restricted to a given experimental evidence., Lee I, Ambaru B, Thakkar P, Marcotte EM, Rhee SY. Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana. Nat Biotechnol. 2010 Feb;28(2):149-56. Epub 2010 Jan 31. PubMed PMID: 20118918; PubMed Central PMCID: PMC2857375., 2010, 100 |
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Online/downloadable | |
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Online | Online |
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Downloadable | |
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Registration required | |
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Free | Free |
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Paid | |
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Working status | Functional |
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Function | Predicted PPIs based on genomic data |
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Category | |
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Tool_frequency | |
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