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A comparative account of protein-protein interaction resources, feature-validations and application-based categorizations

AraNet - Probabilistic Functional Gene Network of Arabidopsis thaliana

Tool nameAraNet - Probabilistic Functional Gene Network of Arabidopsis thaliana
URLhttp://www.functionalnet.org/aranet
Important featuresA resource of interactions in plant proteins (Arabidopsis thaliana). Provides both experimental & predicted interactions. Provides interactions based on the proteins' sequence conservation/similarity. Provides functional associations for the interactions. Provides the pathway and other proteins involved, along with the interactions, for a given set of proteins. Predicted interaction based on gene expression. Provides interactions along with their functional associations. Interactions can be restricted to a given experimental evidence.
CitationsLee I, Ambaru B, Thakkar P, Marcotte EM, Rhee SY. Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana. Nat Biotechnol. 2010 Feb;28(2):149-56. Epub 2010 Jan 31. PubMed PMID: 20118918; PubMed Central PMCID: PMC2857375.
Year of publication2010
Rank by usage frequency100
Comments
FunctionProvide pathway along with PPIs, for a given set of proteins, Predicted PPIs based on gene expression, PPIs with their functional associations, PPIs and their categories based on evidence type, PPIs of plants proteins, Predicted PPIs based on the protein structure
Categoryhttp://www.functionalnet.org/aranet, A resource of interactions in plant proteins (Arabidopsis thaliana). Provides both experimental & predicted interactions. Provides interactions based on the proteins' sequence conservation/similarity. Provides functional associations for the interactions. Provides the pathway and other proteins involved, along with the interactions, for a given set of proteins. Predicted interaction based on gene expression. Provides interactions along with their functional associations. Interactions can be restricted to a given experimental evidence., Lee I, Ambaru B, Thakkar P, Marcotte EM, Rhee SY. Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana. Nat Biotechnol. 2010 Feb;28(2):149-56. Epub 2010 Jan 31. PubMed PMID: 20118918; PubMed Central PMCID: PMC2857375., 2010, 100
Online/downloadable
OnlineOnline
Downloadable
Registration required
FreeFree
Paid
Working statusFunctional
FunctionPredicted PPIs based on genomic data
Category
Tool_frequency

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